feat: read data from arff files #1

Merged
Trianta merged 8 commits from arff into main 2024-03-18 19:59:45 -05:00
12 changed files with 358 additions and 1 deletions

2
.gitignore vendored
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*.out *.out
*.app *.app
# Build directory
build

12
CMakeLists.txt Normal file
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cmake_minimum_required(VERSION 3.10)
project(
weka
LANGUAGES CXX)
set(CMAKE_CXX_STANDARD 11 CACHE STRING "The C++ standard to use")
set(CMAKE_CXX_STANDARD_REQUIRED ON)
set(CMAKE_CXX_EXTENSIONS OFF)
set(EXECUTABLE_OUTPUT_PATH ${PROJECT_BINARY_DIR}/bin)
add_subdirectory(src)

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# weka # arff-mining
## Compiling the project
Prerequisites
- C++11
In order to compile the project, simply run these two commands:
cmake -B build -S .
cmake --build build
## Running the Project
The programs should now be compiled at ./build/bin/
ARFF:
```plain
build/bin/arff
```

52
data/contact-lenses.arff Normal file
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% Title: Database for fitting contact lenses
%
% Number of Instances: 24
%
% Number of Attributes: 4 (all nominal)
%
% Attribute Information -- 3 Classes:
% 1 : the patient should be fitted with hard contact lenses,
% 2 : the patient should be fitted with soft contact lenses,
% 3 : the patient should not be fitted with contact lenses.
%
% Class Distribution:
% 1. hard contact lenses: 4
% 2. soft contact lenses: 5
% 3. no contact lenses: 15
@relation contact-lenses
@attribute age {young, pre-presbyopic, presbyopic}
@attribute spectacle-prescrip {myope, hypermetrope}
@attribute astigmatism {no, yes}
@attribute tear-prod-rate {reduced, normal}
@attribute contact-lenses {soft, hard, none}
@data
%
% 24 instances
%
young,myope,no,reduced,none
young,myope,no,normal,soft
young,myope,yes,reduced,none
young,myope,yes,normal,hard
young,hypermetrope,no,reduced,none
young,hypermetrope,no,normal,soft
young,hypermetrope,yes,reduced,none
young,hypermetrope,yes,normal,hard
pre-presbyopic,myope,no,reduced,none
pre-presbyopic,myope,no,normal,soft
pre-presbyopic,myope,yes,reduced,none
pre-presbyopic,myope,yes,normal,hard
pre-presbyopic,hypermetrope,no,reduced,none
pre-presbyopic,hypermetrope,no,normal,soft
pre-presbyopic,hypermetrope,yes,reduced,none
pre-presbyopic,hypermetrope,yes,normal,none
presbyopic,myope,no,reduced,none
presbyopic,myope,no,normal,none
presbyopic,myope,yes,reduced,none
presbyopic,myope,yes,normal,hard
presbyopic,hypermetrope,no,reduced,none
presbyopic,hypermetrope,no,normal,soft
presbyopic,hypermetrope,yes,reduced,none
presbyopic,hypermetrope,yes,normal,none

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data/restaurant.arff Normal file
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@relation restaurant
% determine whether a customer will wait for a table or not
@attribute Alt {Yes, No}
@attribute Bar {Yes, No}
@attribute Fri {Yes, No}
@attribute Hun {Yes, No}
@attribute Pat {Some, Full, None}
@attribute Price {$, $$, $$$}
@attribute Rain {Yes, No}
@attribute Res {Yes, No}
@attribute Type {French, Thai, Burger, Italian}
@attribute Est {0-10, 10-30, 30-60, >60}
@attribute Wait {Yes, No}
@data
Yes,No,No,Yes,Some,$$$,No,Yes,French,0-10,Yes
Yes,No,No,Yes,Full,$,No,No,Thai,30-60,No
No,Yes,No,No,Some,$,No,No,Burger,0-10,Yes
Yes,No,Yes,Yes,Full,$,Yes,No,Thai,10-30,Yes
Yes,No,Yes,No,Full,$$$,No,Yes,French,>60,No
No,Yes,No,Yes,Some,$$,Yes,Yes,Italian,0-10,Yes
No,Yes,No,No,None,$,Yes,No,Burger,0-10,No
No,No,No,Yes,Some,$$,Yes,Yes,Thai,0-10,Yes
No,Yes,Yes,No,Full,$,Yes,No,Burger,>60,No
Yes,Yes,Yes,Yes,Full,$$$,No,Yes,Italian,10-30,No
No,No,No,No,None,$,No,No,Thai,0-10,No
Yes,Yes,Yes,Yes,Full,$,No,No,Burger,30-60,Yes

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src/CMakeLists.txt Normal file
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add_subdirectory(arff)

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src/arff/CMakeLists.txt Normal file
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add_executable(arff
./main.cpp
./arff.cpp
)

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src/arff/arff.cpp Normal file
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#include "arff.hpp"
#include <iostream>
#include <fstream>
#include <sstream>
#include <algorithm>
namespace ARFF {
bool isVerbose = false;
void ParseArguments(int argc, char* argv[]) {
std::string argument_string;
for (int i = 0; i < argc; ++i) {
argument_string.assign(argv[i]);
if (argument_string == "-v" || argument_string == "--verbose") {
isVerbose = true;
}
}
}
std::string GetDataFilename(void) {
std::string filename;
std::cout << "Please enter name of the data file:\t";
std::cin >> filename;
if (filename.empty()) {
LogError("ARFF/Setup", "No data filename provided, exiting...");
exit(1);
}
std::cout << std::endl;
return filename;
}
void LogInfo(const std::string location, const std::string message) {
if (!isVerbose) { return; }
std::cout << '[' << location << " - INFO] ";
std::cout << message << std::endl;
}
void LogError(const std::string location, const std::string message) {
if (!isVerbose) { return; }
std::cerr << '[' << location << " - ERROR] ";
std::cerr << message << std::endl;
}
AttributeType::AttributeType(std::string attribute) {
this->attribute = attribute;
}
void AttributeType::AddValue(std::string value) {
values.emplace_back(value);
}
Instance::Instance(const int id, const int size) {
this->id = id;
this->values.resize(size);
}
// Read entire data file and parse it
void Arff::Read(std::string filename) {
std::ifstream dataFile(filename);
if (!dataFile.is_open()) {
LogError("ARFF/Read", "Unable to open file with name `"
+ filename + ", exiting...");
exit(1);
}
std::string line;
while (std::getline(dataFile, line)) {
if (line.size() == 1) { continue; }
switch (line.at(0)) {
case '%':
// Comment line in data
continue;
break;
case '@':
AddAttribute(line);
break;
default:
AddData(line);
break;
}
}
TestIntegrity();
}
void Arff::Print(void) {
std::cout << attributeList.size() << " attributes\n";
std::cout << database.size() << " examples\n";
std::cout << std::endl;
std::cout << "Attribute (#): values\n";
for (AttributeType type : attributeList) {
std::cout << type.attribute << " (" << type.values.size() << "):";
for (std::string value : type.values) {
std::cout << " " << value;
}
std::cout << '\n';
}
std::cout << std::endl;
std::cout << relation << '\n';
for (Instance instance: database) {
for (std::string value : instance.values) {
std::cout << '\t' << value;
}
std::cout << '\n';
}
std::cout << std::endl;
}
// Add the attribute to the list
void Arff::AddAttribute(std::string line) {
std::stringstream parser(line);
std::string token;
parser >> token;
// Signifies beginning of data
// Might add a boolean later to mark this
if (token == "@data") {
return;
}
if (token == "@relation") {
parser >> token;
relation = token;
LogInfo("ARFF/Attribute", "Relation set: " + relation);
return;
}
parser >> token;
attributeList.emplace_back(token);
LogInfo("ARFF/Attribute", "Added attribute: " + token);
while (parser >> token) {
// Clean token from outside pieces
token.erase(std::remove(token.begin(), token.end(), '{'), token.end());
token.erase(std::remove(token.begin(), token.end(), '}'), token.end());
token.erase(std::remove(token.begin(), token.end(), ','), token.end());
token.erase(std::remove(token.begin(), token.end(), '\r'), token.end());
token.erase(std::remove(token.begin(), token.end(), '\n'), token.end());
attributeList.back().AddValue(token);
LogInfo("ARFF/Attribute", "Added value: " + token);
}
}
// Add data to runtime database
void Arff::AddData(std::string line) {
std::istringstream parser(line);
std::string token;
int id = 0;
if (!database.empty()) { id = database.back().id + 1; }
database.emplace_back(id, attributeList.size());
LogInfo("ARFF/Data", "Added id: " + std::to_string(database.back().id));
for (int i = 0; i < attributeList.size(); ++i) {
std::getline(parser, token, ',');
token.erase(std::remove(token.begin(), token.end(), '\r'), token.end());
token.erase(std::remove(token.begin(), token.end(), '\n'), token.end());
database.back().values.at(i) = token;
LogInfo("ARFF/Data", "Added instance value: " + token);
}
}
void Arff::TestIntegrity(void) {
for (Instance instance : database) {
int successCheck = 0;
for (int i = 0; i < attributeList.size(); ++i) {
LogInfo("ARFF/Integrity", "Instance value tested: '"
+ instance.values.at(i) + "'");
for (std::string value : attributeList.at(i).values) {
LogInfo("ARFF/Integrity", "attributeList value: '"
+ value + "'");
if (instance.values.at(i) == value) {
LogInfo("ARFF/Integrity", "Value found: " + value);
++successCheck;
break;
}
}
}
if (successCheck != attributeList.size()) {
LogError("ARFF/Integrity", "Value size mismatch: "
+ std::to_string(successCheck) + " out of "
+ std::to_string(attributeList.size()));
exit(1);
}
}
LogInfo("ARFF/Integrity", "All values exist, continuing...");
}
}

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src/arff/arff.hpp Normal file
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#ifndef ARFF_HPP
#define ARFF_HPP
#include <string>
#include <vector>
namespace ARFF {
void ParseArguments(int argc, char* argv[]);
std::string GetDataFilename(void);
void LogInfo(const std::string location, const std::string message);
void LogError(const std::string location, const std::string message);
struct AttributeType {
public:
std::string attribute;
std::vector<std::string> values;
AttributeType(std::string attribute);
void AddValue(std::string value);
};
struct Instance {
public:
Instance(const int id, const int size);
unsigned int id;
std::vector<std::string> values;
};
class Arff {
public:
Arff() = default;
void Read(std::string filename);
void Print(void);
private:
std::string relation;
std::vector<AttributeType> attributeList;
std::vector<Instance> database;
void AddAttribute(std::string line);
void AddData(std::string line);
void TestIntegrity(void);
};
}
#endif

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src/arff/main.cpp Normal file
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/*
* Author: Gregory Crawford
* Date: 2024-03-18
* Description: Read and store ARFF data from a file
*/
#include "arff.hpp"
int main(int argc, char* argv[]) {
ARFF::ParseArguments(argc, argv);
ARFF::Arff data;
data.Read(ARFF::GetDataFilename());
data.Print();
}